Skip to main content
SpringerLink
Log in

Algorithms for Computational Biology

6th International Conference, AlCoB 2019, Berkeley, CA, USA, May 28–30, 2019, Proceedings

  • Conference proceedings
  • © 2019

Overview

Editors:
  1. Ian Holmes

    1. University of California, Berkeley, Berkeley, USA

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  2. Carlos Martín-Vide

    1. Rovira i Virgili University, Tarragona, Spain

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  3. Miguel A. Vega-Rodríguez

    1. University of Extremadura, Cáceres, Spain

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 11488)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: AlCoB 2019.

This is a preview of subscription content, log in via an institution to check access.

Access this book

Log in via an institution
eBook USD 49.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 64.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

Licence this eBook for your library

Institutional subscriptions

Table of contents (16 papers)

  1. Front Matter

    Pages i-xvi
    Download chapter PDF

  3. Biological Networks and Graph Algorithms

    1. Front Matter

      Pages 23-23
      Download chapter PDF

    2. New Polynomial-Time Algorithm Around the Scaffolding Problem

      • Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
      Pages 25-38

    3. Enumerating Dominant Pathways in Biological Networks by Information Flow Analysis

      • Ozan Kahramanoğulları
      Pages 39-51

    4. Comparing Different Graphlet Measures for Evaluating Network Model Fits to BioGRID PPI Networks

      • Sridevi Maharaj, Zarin Ohiba, Wayne Hayes
      Pages 52-67

    5. Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots

      • Louis Petingi, Tamar Schlick
      Pages 68-79

    6. PathRacer: Racing Profile HMM Paths on Assembly Graph

      • Alexander Shlemov, Anton Korobeynikov
      Pages 80-94

  4. Genome Rearrangement, Assembly and Classification

    1. Front Matter

      Pages 95-95
      Download chapter PDF

    2. A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems

      • Pavel Avdeyev, Maria Atamanova, Max A. Alekseyev
      Pages 97-111

    3. Lightweight Metagenomic Classification via eBWT

      • Veronica Guerrini, Giovanna Rosone
      Pages 112-124

    4. MULKSG: MULtiple K Simultaneous Graph Assembly

      • Christopher Wright, Sriram Krishnamoorty, Milind Kulkarni
      Pages 125-136

    5. Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance

      • João Paulo Pereira Zanetti, Leonid Chindelevitch, João Meidanis
      Pages 137-151

    6. Generalizations of the Genomic Rank Distance to Indels

      • João Paulo Pereira Zanetti, Leonid Chindelevitch, João Meidanis
      Pages 152-164

  5. Sequence Analysis, Phylogenetics and Other Biological Processes

    1. Front Matter

      Pages 165-165
      Download chapter PDF

    2. Using INC Within Divide-and-Conquer Phylogeny Estimation

      • Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi (Richard) Zhang, Satish Rao, Tandy Warnow
      Pages 167-178

    3. Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention

      • Alona Levy-Jurgenson, Xavier Tekpli, Vessela N. Kristensen, Zohar Yakhini
      Pages 179-190

    4. A Mathematical Model for Enhancer Activation Kinetics During Cell Differentiation

      • Kari Nousiainen, Jukka Intosalmi, Harri Lähdesmäki
      Pages 191-202

    5. Transcript Abundance Estimation and the Laminar Packing Problem

      • Atif Rahman, Lior Pachter
      Pages 203-211
Back to top

Other volumes

  1. Algorithms for Computational Biology

Keywords

About this book

This book constitutes the proceedings of the 6th InternationalConference on Algorithms for Computational Biology, AlCoB 2019, held in Berkeley, CA, USA, in May 2019.

The 15 full papers presented together with 1 invited paper were carefully reviewed and selected from 30 submissions. They are organized in the following topical sections: Biological networks and graph algorithms; genome rearrangement, assembly and classification; sequence analysis, phylogenetics and other biological processes.

Editors and Affiliations

  • University of California, Berkeley, Berkeley, USA

    Ian Holmes

  • Rovira i Virgili University, Tarragona, Spain

    Carlos Martín-Vide

  • University of Extremadura, Cáceres, Spain

    Miguel A. Vega-Rodríguez

Bibliographic Information

Publish with us

Policies and ethics

Back to top

Search

Navigation