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DNA Computing and Molecular Programming

16th International Conference, DNA 16, Hong Kong, China, June 14-17, 2010, Revised Selected Papers

  • Conference proceedings
  • © 2011

Overview

Editors:
  1. Yasubumi Sakakibara

    1. Department of Biosciences and Informatics, Keio University, Yokohama, Japan

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  2. Yongli Mi

    1. Department of Chemical Engineering, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China

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    You can also search for this editor in PubMed   Google Scholar

  • High quality selected papers
  • Unique visibility
  • State of the art research

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6518)

Part of the book sub series: Theoretical Computer Science and General Issues (LNTCS)

Included in the following conference series:

Conference proceedings info: DNA 2010.

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Table of contents (16 papers)

  1. Front Matter

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  2. Improving Efficiency of 3-SAT-Solving Tile Systems

    • Yuriy Brun
    Pages 1-12

  3. Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems

    • Ho-Lin Chen, Ming-Yang Kao
    Pages 13-24

  4. Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement

    • Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki
    Pages 25-36

  5. Negative Interactions in Irreversible Self-assembly

    • David Doty, Lila Kari, Benoît Masson
    Pages 37-48

  6. Search and Validation of Short Genome-Wide Biomarkers for Bacterial Biological Phylogenies

    • Max H. Garzon, Tit-Yee Wong
    Pages 49-58

  7. High-Fidelity DNA Hybridization Using Programmable Molecular DNA Devices

    • Nikhil Gopalkrishnan, Harish Chandran, John Reif
    Pages 59-70

  8. Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly

    • Mika Göös, Pekka Orponen
    Pages 71-82

  9. Operation of a DNA-Based Autocatalytic Network in Serum

    • Elton Graugnard, Amber Cox, Jeunghoon Lee, Cheryl Jorcyk, Bernard Yurke, William L. Hughes
    Pages 83-88

  10. Triangular Tile Self-assembly Systems

    • Lila Kari, Shinnosuke Seki, Zhi Xu
    Pages 89-99

  11. Randomized Self Assembly of Rectangular Nano Structures

    • Vamsi Kundeti, Sanguthevar Rajasekaran
    Pages 100-111

  12. Design of a Functional Nanomaterial with Recognition Ability for Constructing Light-Driven Nanodevices

    • Xingguo Liang, Toshio Mochizuki, Taiga Fujii, Hiromu Kashida, Hiroyuki Asanuma
    Pages 112-122

  13. Efficient Turing-Universal Computation with DNA Polymers

    • Lulu Qian, David Soloveichik, Erik Winfree
    Pages 123-140

  14. Reversible Transition of Photonic DNA Automaton Using Hairpin-DNA Responding to a Single Kind of Photonic Signal

    • Hiroto Sakai, Yusuke Ogura, Jun Tanida
    Pages 141-146

  15. Simple Evolution of Complex Crystal Species

    • Rebecca Schulman, Erik Winfree
    Pages 147-161

  16. Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions

    • David Yu Zhang
    Pages 162-175

  17. DNA-Based Fixed Gain Amplifiers and Linear Classifier Circuits

    • David Yu Zhang, Georg Seelig
    Pages 176-186

  18. Back Matter

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Other volumes

  1. DNA Computing and Molecular Programming

Keywords

About this book

This book constitutes the thoroughly refereed post-conference proceedings of the 16th International Conference on DNA Computing and Molecular Programming, DNA16, held in Hong Kong, China, in June 2010. The 16 revised full papers presented were carefully selected during two rounds of reviewing and improvement from 59 submissions. The papers are well balanced between theoretical and experimental work and address all areas that relate to biomolecular computing, including demonstrations of biomolecular computing, theoretical models of biomolecular computing, biomolecular algorithms, computational processes in vitro and in vivo, analysis and theoretical models of laboratory techniques, biotechnological and other applications of DNA computing, DNA nanostructures, DNA devices such as DNA motors, DNA error evaluation and correction, in vitro evolution, molecular design, self-assembled systems, nucleic acid chemistry, and simulation tools.

Editors and Affiliations

  • Department of Biosciences and Informatics, Keio University, Yokohama, Japan

    Yasubumi Sakakibara

  • Department of Chemical Engineering, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China

    Yongli Mi

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