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Computational Methods in Systems Biology

International Conference CMSB 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings

  • Conference proceedings
  • © 2007

Overview

Editors:
  1. Muffy Calder
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  2. Stephen Gilmore
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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 4695)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: CMSB 2007.

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Table of contents (16 papers)

  1. Front Matter

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  2. Chemical Master Equation and Langevin Regimes for a Gene Transcription Model

    • Raya Khanin, Desmond J. Higham
    Pages 1-14

  3. Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models

    • Werner Sandmann
    Pages 15-31

  4. Modelling Yeast Pre-rRNA Processing

    • Federica Ciocchetta, Jane Hillston, Martin Kos, David Tollervey
    Pages 32-47

  5. On the Analysis of Numerical Data Time Series in Temporal Logic

    • François Fages, Aurélien Rizk
    Pages 48-63

  6. Context Sensitivity in Logical Modeling with Time Delays

    • Heike Siebert, Alexander Bockmayr
    Pages 64-79

  7. Stochastic Simulation of Biological Systems with Dynamical Compartment Structure

    • Cristian Versari, Nadia Busi
    Pages 80-95

  8. Computational Simulation of Optical Tracking of Cell Populations Using Quantum Dot Fluorophores

    • Martyn R. Brown, Paul Rees, Steve Wilks, Huw D. Summers, Rachel J. Errington, Kerenza L. Njoh et al.
    Pages 96-105

  9. A Formal and Integrated Framework to Simulate Evolution of Biological Pathways

    • Lorenzo Dematté, Corrado Priami, Alessandro Romanel, Orkun Soyer
    Pages 106-120

  10. Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray Data Using Stochastic Logical Networks

    • Bartek WilczyÅ„ski, Jerzy Tiuryn
    Pages 121-135

  11. An Automated Translation from a Narrative Language for Biological Modelling into Process Algebra

    • Maria Luisa Guerriero, John K. Heath, Corrado Priami
    Pages 136-151

  12. Expressive Models for Synaptic Plasticity

    • Andrea Bracciali, Marcello Brunelli, Enrico Cataldo, Pierpaolo Degano
    Pages 152-167

  13. Modelization and Simulation of Nano Devices in nano κ Calculus

    • Alberto Credi, Marco Garavelli, Cosimo Laneve, Sylvain Pradalier, Serena Silvi, Gianluigi Zavattaro
    Pages 168-183

  14. Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus

    • Andrew Phillips, Luca Cardelli
    Pages 184-199

  15. A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets

    • David Gilbert, Monika Heiner, Sebastian Lehrack
    Pages 200-216

  16. Reconstructing Metabolic Pathways by Bidirectional Chemical Search

    • Liliana Félix, Francesc Rosselló, Gabriel Valiente
    Pages 217-232

  17. Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks

    • Aurélien Naldi, Denis Thieffry, Claudine Chaouiya
    Pages 233-247

  18. Back Matter

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  1. Computational Methods in Systems Biology

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