Name: Bioinformatics Research and Applications
ISBN: 978-3-319-08171-7

Editors:

Mitra Basu⁰,
Yi Pan¹,
Jianxin Wang²

Mitra Basu
1. Johns Hopkins University, Computer Science Department, Baltimore, MD 21218, USA and National Science Foundation, 1115, CCF, USA
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Yi Pan
1. Department of Computer Science, Georgia State University, Atlanta, USA
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Jianxin Wang
1. School of Information Science and Engineering, Central South University, Changsha, China
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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 8492)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): ISBRA: International Symposium on Bioinformatics Research and Applications

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Conference proceedings info: ISBRA 2014.

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Table of contents (32 papers)

Front Matter

PDF
Full Papers
1. Predicting Disease Risks Using Feature Selection Based on Random Forest and Support Vector Machine
  
  Jing Yang, Dengju Yao, Xiaojuan Zhan, Xiaorong Zhan
  
  Pages 1-11
2. Phylogenetic Bias in the Likelihood Method Caused by Missing Data Coupled with Among-Site Rate Variation: An Analytical Approach
  
  Xuhua Xia
  
  Pages 12-23
3. An Eigendecomposition Method for Protein Structure Alignment
  
  Satish Chandra Panigrahi, Asish Mukhopadhyay
  
  Pages 24-37
4. Functional Interplay between Hemagglutinin and Neuraminidase of Pandemic 2009 H1N1 from the Perspective of Virus Evolution
  
  Wei Hu
  
  Pages 38-49
5. Predicting Protein Submitochondrial Locations Using a K-Nearest Neighbors Method Based on the Bit-Score Weighted Euclidean Distance
  
  Jing Hu, Xianghe Yan
  
  Pages 50-58
6. Algorithms Implemented for Cancer Gene Searching and Classifications
  
  Murad M. Al-Rajab, Joan Lu
  
  Pages 59-70
7. Dysregulated microRNA Profile in HeLa Cell Lines Induced by Lupeol
  
  Xiyuan Lu, Cuihong Dai, Aiju Hou, Jie Cui, Dayou Cheng, Dechang Xu
  
  Pages 71-80
8. A Simulation for Proportional Biological Operational Mu-Circuit
  
  Dechang Xu, Zhipeng Cai, Ke Liu, Xiangmiao Zeng, Yujing Ouyang, Cuihong Dai et al.
  
  Pages 81-91
9. Computational Prediction of Human Saliva-Secreted Proteins
  
  Ying Sun, Chunguang Zhou, Jiaxin Wang, Zhongbo Cao, Wei Du, Yan Wang
  
  Pages 92-101
10. A Parallel Scheme for Three-Dimensional Reconstruction in Large-Field Electron Tomography
  
  Jingrong Zhang, Xiaohua Wan, Fa Zhang, Fei Ren, Xuan Wang, Zhiyong Liu
  
  Pages 102-113
11. An Improved Correlation Method Based on Rotation Invariant Feature for Automatic Particle Selection
  
  Yu Chen, Fei Ren, Xiaohua Wan, Xuan Wang, Fa Zhang
  
  Pages 114-125
12. An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra
  
  Yi Liu, Bin Ma, Kaizhong Zhang, Gilles Lajoie
  
  Pages 126-137
13. Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding
  
  Lin Zhu, Zhu-Hong You, De-Shuang Huang
  
  Pages 138-148
14. Multiple RNA Interaction with Sub-optimal Solutions
  
  Syed Ali Ahmed, Saad Mneimneh
  
  Pages 149-162
15. Application of Consensus String Matching in the Diagnosis of Allelic Heterogeneity
  
  Fatema Tuz Zohora, M. Sohel Rahman
  
  Pages 163-175
16. Continuous Time Bayesian Networks for Gene Network Reconstruction: A Comparative Study on Time Course Data
  
  Enzo Acerbi, Fabio Stella
  
  Pages 176-187
17. Drug Target Identification Based on Structural Output Controllability of Complex Networks
  
  Lin Wu, Yichao Shen, Min Li, Fang-Xiang Wu
  
  Pages 188-199
18. NovoGMET: De Novo Peptide Sequencing Using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra
  
  Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu
  
  Pages 200-211
19. Duplication Cost Diameters
  
  Paweł Górecki, Jarosław Paszek, Oliver Eulenstein
  
  Pages 212-223

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Bioinformatics Research and Applications

About this book

This book constitutes the refereed proceedings of the 10th International Symposium on Bioinformatics Research and Applications, ISBRA 2014, held in Zhangjiajie, China, in June 2014. The 33 revised full papers and 31 one-page abstracts included in this volume were carefully reviewed and selected from 119 submissions. The papers cover a wide range of topics in bioinformatics and computational biology and their applications including the development of experimental or commercial systems.

Keywords

Editors and Affiliations

Johns Hopkins University, Computer Science Department, Baltimore, MD 21218, USA and National Science Foundation, 1115, CCF, USA

Mitra Basu
Department of Computer Science, Georgia State University, Atlanta, USA

Yi Pan
School of Information Science and Engineering, Central South University, Changsha, China

Jianxin Wang

Bibliographic Information

Book Title: Bioinformatics Research and Applications
Book Subtitle: 10th International Symposium, ISBRA 2014, Zhangjiajie, China, June 28-30, 2014, Proceedings
Editors: Mitra Basu, Yi Pan, Jianxin Wang
Series Title: Lecture Notes in Computer Science
DOI: https://doi.org/10.1007/978-3-319-08171-7
Publisher: Springer Cham
eBook Packages: Computer Science, Computer Science (R0)
Copyright Information: Springer International Publishing Switzerland 2014
Softcover ISBN: 978-3-319-08170-0Published: 04 August 2014
eBook ISBN: 978-3-319-08171-7Published: 23 June 2014
Series ISSN: 0302-9743
Series E-ISSN: 1611-3349
Edition Number: 1
Number of Pages: XVIII, 409
Number of Illustrations: 115 b/w illustrations
Topics: Computational Biology/Bioinformatics, Data Mining and Knowledge Discovery, Pattern Recognition, Mathematical and Computational Biology

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Table of contents (32 papers)

Front Matter

Full Papers

Predicting Disease Risks Using Feature Selection Based on Random Forest and Support Vector Machine

Phylogenetic Bias in the Likelihood Method Caused by Missing Data Coupled with Among-Site Rate Variation: An Analytical Approach

An Eigendecomposition Method for Protein Structure Alignment

Functional Interplay between Hemagglutinin and Neuraminidase of Pandemic 2009 H1N1 from the Perspective of Virus Evolution

Predicting Protein Submitochondrial Locations Using a K-Nearest Neighbors Method Based on the Bit-Score Weighted Euclidean Distance

Algorithms Implemented for Cancer Gene Searching and Classifications

Dysregulated microRNA Profile in HeLa Cell Lines Induced by Lupeol

A Simulation for Proportional Biological Operational Mu-Circuit

Computational Prediction of Human Saliva-Secreted Proteins

A Parallel Scheme for Three-Dimensional Reconstruction in Large-Field Electron Tomography

An Improved Correlation Method Based on Rotation Invariant Feature for Automatic Particle Selection

An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra

Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding

Multiple RNA Interaction with Sub-optimal Solutions

Application of Consensus String Matching in the Diagnosis of Allelic Heterogeneity

Continuous Time Bayesian Networks for Gene Network Reconstruction: A Comparative Study on Time Course Data

Drug Target Identification Based on Structural Output Controllability of Complex Networks

NovoGMET: De Novo Peptide Sequencing Using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra

Duplication Cost Diameters

Other Volumes