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  • © 2011

Problem Solving Handbook in Computational Biology and Bioinformatics

  • Brings together, in one place,

  • the algorithms and methods that form the modern bioinformatician’s toolkit

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Table of contents (15 chapters)

  1. Front Matter

    Pages i-xvii
  2. Sequences

    1. Front Matter

      Pages 1-2
    2. Modern BLAST Programs

      • Jian Ma, Louxin Zhang
      Pages 3-19
    3. Practical Multiple Sequence Alignment

      • Tobias Rausch, Knut Reinert
      Pages 21-43
    4. Sequence Alignment Statistics

      • John L. Spouge
      Pages 45-60
  3. Phylogenetics

    1. Front Matter

      Pages 61-62
    2. Practical Implications of Coalescent Theory

      • Paul Marjoram, Paul Joyce
      Pages 63-84
    3. Phylogenetic Trees From Sequences

      • Paul Ryvkin, Li-San Wang
      Pages 101-124
    4. Genome Wide Association Studies

      • Paola Sebastiani, Nadia Solovieff
      Pages 159-175
  4. Proteins: Structure, Function, and Biochemistry

    1. Front Matter

      Pages 177-178
    2. Novel Perspectives on Protein Structure Prediction

      • Bonnie Berger, Jéerôme Waldispühl
      Pages 179-207
  5. Networks

    1. Front Matter

      Pages 231-232
    2. Cellular Response Networks

      • Christopher D. Lasher, Christopher L. Poirel, T. M. Murali
      Pages 233-252
    3. Identification of Modules in Protein-Protein Interaction Networks

      • Sinan Erten, Mehmet Koyutürk
      Pages 253-267
  6. Biological Data Management and Mining

    1. Front Matter

      Pages 269-270
    2. Designing Microarray Experiments

      • Paola Sebastiani, Jacqui Milton, Ling Wang
      Pages 271-290
    3. Matrix and Tensor Decompositions

      • Karthik Devarajan
      Pages 291-318

About this book

Bioinformatics is growing by leaps and bounds; theories/algorithms/statistical techniques are constantly evolving. Nevertheless, a core body of algorithmic ideas have emerged and researchers are beginning to adopt a "problem solving" approach to bioinformatics, wherein they use solutions to well-abstracted problems as building blocks to solve larger scope problems.

Problem Solving Handbook for Computational Biology and Bioinformatics is an edited volume contributed by world renowned leaders in this field. This comprehensive handbook with problem solving emphasis, covers all relevant areas of computational biology and bioinformatics. Web resources and related themes are highlighted at every opportunity in this central easy-to-read reference.

Designed for advanced-level students, researchers and professors in computer science and bioengineering as a reference or secondary text, this handbook is also suitable for professionals working in this industry.

Reviews

From the reviews:

“The editors of this handbook … have ‘collect(ed) together, in one place, the algorithms and methods that form the modern bioinformatician’s toolkit.’ … Each chapter contains an introduction to the respective topic, detailed descriptions of the relevant algorithmic methods, software implementations, and applications, and concludes with advanced topics. … this handbook provides some value for researchers and practitioners in the field. … In summary, for most of the topics covered, this book complements the standard textbooks in a useful way.” (Gunnar Klau, ACM Computing Reviews, June, 2011)

Editors and Affiliations

  • Dept. Computer Science, Virginia Tech, Blacksburg, USA

    Lenwood S. Heath, Naren Ramakrishnan

Bibliographic Information

  • Book Title: Problem Solving Handbook in Computational Biology and Bioinformatics

  • Editors: Lenwood S. Heath, Naren Ramakrishnan

  • DOI: https://doi.org/10.1007/978-0-387-09760-2

  • Publisher: Springer New York, NY

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: Springer Science+Business Media, LLC 2011

  • Hardcover ISBN: 978-0-387-09759-6Published: 28 October 2010

  • Softcover ISBN: 978-1-4899-7348-1Published: 15 August 2014

  • eBook ISBN: 978-0-387-09760-2Published: 20 October 2010

  • Edition Number: 1

  • Number of Pages: XVII, 347

  • Topics: Computational Biology/Bioinformatics, Algorithm Analysis and Problem Complexity, Bioinformatics

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access