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Neuroscience Databases

A Practical Guide

  • Book
  • © 2003

Overview

Editors:
  1. Rolf Kötter

    1. Heinrich Heine University Düsseldorf, Düsseldorf, Germany

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Table of contents (20 chapters)

  1. Front Matter

    Pages i-xviii
    Download chapter PDF

  2. Neuroinformatics for C. elegans: Relating Mind and Body in Wormbase

    • Nansheng Chen, Raymond Y. N. Lee, Zeynep F. Altun, Thomas Boulin, Paul W. Sternberg, Lincoln D. Stein
    Pages 1-17

  3. A Gene Expression Map of the Mouse Brain

    • Axel Visel, Jamila Ahdidan, Gregor Eichele
    Pages 19-35

  4. Databases for the Functional Analyses of Olfactory Receptors

    • Chiquito J. Crasto, Nian Liu, Gordon M. Shepherd
    Pages 37-50

  5. Construction of a Protein-Protein Interaction Database (PPID) for Synaptic Biology

    • Holger Husi, Seth G. N. Grant
    Pages 51-62

  6. Modeling The Dynamics of Second Messenger Pathways

    • Kim. T. Blackwell, Jeanette Hellgren Kotaleski
    Pages 63-79

  7. Web-Based Neuronal Archives

    • Dennis A. Turner, Robert C. Cannon, Giorgio A. Ascoli
    Pages 81-97

  8. ModelDB: A Resource for Neuronal and Network Modeling

    • Andrew P. Davison, Thomas M. Morse, Michele Migliore, Luis Marenco, Gordon M. Shepherd, Michael L. Hines
    Pages 99-109

  9. CoCoDat: Collation of Cortical Data on Neurons and Microcircuitry

    • Jonas D.-Johnsen, Jürgen Maier, Klaas E. Stephan, Rolf Kötter
    Pages 111-122

  10. Computer Models and Analysis Tools for Neural Microcircuits

    • Thomas Natschläger, Henry Markram, Wolfgang Maass
    Pages 123-138

  11. A Practical Guide to Information Analysis of Spike Trains

    • Gianni Pola, Simon R. Schultz, Rasmus S. Petersen, Stefano Panzeri
    Pages 139-154

  12. An Introduction to CoCoMac-Online

    • Lars Kamper, Ahmet Bozkurt, Konrad Rybacki, Andreas Geissler, Ina Gerken, Klaas E. Stephan et al.
    Pages 155-169

  13. Graph Theory Methods for the Analysis of Neural Connectivity Patterns

    • Olaf Sporns
    Pages 171-185

  14. The PUPS-MOSIX Environment: A Homeostatic Environment for Neuro- and Bio-informatic Applications

    • Mark A. O’Neill, Gully A. P. C Burns, Claus C. Hilgetag
    Pages 187-202

  15. The NeuroHomology Database: An Online KMS for Handling and Evaluation of the Neurobiological Information

    • Mihail Bota, Michael A. Arbib
    Pages 203-219

  16. The fMRI Data Center: Software Tools for Neuroimaging Data Management, Inspection, and Sharing

    • John Darrell Van Horn, Jeffrey B. Woodward, Geoffrey Simonds, Bennet Vance, Jeffrey S. Grethe, Mark Montague et al.
    Pages 221-235

  17. Statistical Parametric Mapping

    • Karl J. Friston
    Pages 237-250

  18. The Brain Positioning Software

    • Volker Schmitt, Andrzej Wichert, Jo Grothe, Friedrich T. Sommer
    Pages 251-258

  19. BrainInfo

    • Douglas M. Bowden, Mark Dubach
    Pages 259-273

  20. Federation of Brain Data through Knowledge-guided Mediation

    • Maryann E. Martone, Amarnath Gupta, Bertram Ludäscher, Ilya Zaslavsky, Mark H. Ellisman
    Pages 275-291
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Keywords

About this book

Neuroscience Databases: A Practical Guide is the first book providing a comprehensive overview of these increasingly important databases. This volume makes the results of the Human Genome Project and other recent large-scale initiatives in the neurosciences available to a wider community. It extends the scope of bioinformatics from the molecular to the cellular, microcircuitry and systems levels, dealing for the first time with complex neuroscientific issues and leading the way to a new culture of data sharing and data mining necessary to successfully tackle neuroscience questions.
Aimed at the novice user who wants to access the data, it provides clear and concise instructions on how to download the available data sets and how to use the software with a minimum of technical detail with most chapters written by the database creators themselves.

Editors and Affiliations

  • Heinrich Heine University Düsseldorf, Düsseldorf, Germany

    Rolf Kötter

About the editor

Rolf Kötter is a staff member at the Dept. of Anatomy II and Leader of the Computational Systems Neuroscience Group at the C. & O. Vogt Brain Research Institute, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.

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