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  • © 2012

Evolutionary Genomics

Statistical and Computational Methods, Volume 2

Editors:

  • Serves as an ideal reference for young and experienced researchers alike
  • Features practical, step-by-step guidance to methodologies being used in the field
  • Includes key implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 856)

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Table of contents (22 protocols)

  1. Front Matter

    Pages i-xv
  2. Phylogenomics

    1. Front Matter

      Pages 1-1
    2. Tangled Trees: The Challenge of Inferring Species Trees from Coalescent and Noncoalescent Genes

      • Christian N. K. Anderson, Liang Liu, Dennis Pearl, Scott V. Edwards
      Pages 3-28
    3. Modeling Gene Family Evolution and Reconciling Phylogenetic Discord

      • Gergely J. Szöllősi, Vincent Daubin
      Pages 29-51
    4. Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of Life

      • Pere Puigbò, Yuri I. Wolf, Eugene V. Koonin
      Pages 53-79
    5. Philosophy and Evolution: Minding the Gap Between Evolutionary Patterns and Tree-Like Patterns

      • Eric Bapteste, Frédéric Bouchard, Richard M. Burian
      Pages 81-110
  3. Natural Selection, Recombination, and Innovation in Genomic Sequences

    1. Front Matter

      Pages 111-111
    2. Selection on the Protein-Coding Genome

      • Carolin Kosiol, Maria Anisimova
      Pages 113-140
    3. Methods to Detect Selection on Noncoding DNA

      • Ying Zhen, Peter Andolfatto
      Pages 141-159
    4. The Origin and Evolution of New Genes

      • Margarida Cardoso-Moreira, Manyuan Long
      Pages 161-186
    5. Evolution of Protein Domain Architectures

      • Kristoffer Forslund, Erik L. L. Sonnhammer
      Pages 187-216
    6. Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces

      • Sergei L. Kosakovsky Pond, Ben Murrell, Art F. Y. Poon
      Pages 239-272
  4. Population Genomics

    1. Front Matter

      Pages 273-273
    2. Association Mapping and Disease: Evolutionary Perspectives

      • Søren Besenbacher, Thomas Mailund, Mikkel H. Schierup
      Pages 275-291
    3. Ancestral Population Genomics

      • Julien Y. Dutheil, Asger Hobolth
      Pages 293-313
  5. The “-omics”

    1. Front Matter

      Pages 333-333
  6. The "-omics"

    1. Characterization and Evolutionary Analysis of Protein–Protein Interaction Networks

      • Gabriel Musso, Andrew Emili, Zhaolei Zhang
      Pages 363-380

About this book

Together with early theoretical work in population genetics, the debate on sources of genetic makeup initiated by proponents of the neutral theory made a solid contribution to the spectacular growth in statistical methodologies for molecular evolution. Evolutionary Genomics: Statistical and Computational Methods is intended to bring together the more recent developments in the statistical methodology and the challenges that followed as a result of rapidly improving sequencing technologies.  Presented by top scientists from a variety of disciplines, the collection includes a wide spectrum of articles encompassing theoretical works and hands-on tutorials, as well as many reviews with key biological insight.  Volume 2 begins with phylogenomics and continues with in-depth coverage of natural selection, recombination, and genomic innovation. The remaining chapters treat topics of more recent interest, including population genomics, -omics studies, and computational issues related to the handling of large-scale genomic data.  Written in the highly successful Methods in Molecular Biology™ series format, this work provides the kind of advice on methodology and implementation that is crucial for getting ahead in genomic data analyses.

 

Comprehensive and cutting-edge, Evolutionary Genomics: Statistical and Computational Methods is a treasure chest of state-of the-art methods to study genomic and omics data, certain to inspire both young and experienced readers to join the interdisciplinary field of evolutionary genomics.

Editors and Affiliations

  • Department of Computer Science, ETH Zürich, Zürich, Switzerland

    Maria Anisimova

Bibliographic Information

  • Book Title: Evolutionary Genomics

  • Book Subtitle: Statistical and Computational Methods, Volume 2

  • Editors: Maria Anisimova

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-585-5

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-61779-584-8Published: 08 March 2012

  • Softcover ISBN: 978-1-4939-6042-2Published: 23 August 2016

  • eBook ISBN: 978-1-61779-585-5Published: 08 March 2012

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XV, 556

  • Topics: Human Genetics, Evolutionary Biology

Buy it now

Buying options

eBook USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 179.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access