Computational Science – ICCS 2008

1. Front Matter

   PDF

2. Workshop on Dynamic Data Driven Application Systems

   1. Front Matter

      Pages 1-1

      PDF

   2. Dynamic Data Driven Applications Systems – DDDAS 2008

      • Craig C. Douglas

      Pages 3-4

   3. Dynamic Data Driven Applications Systems (DDDAS) – A Transformative Paradigm

      • Frederica Darema

      Pages 5-5

   4. Evaluation of Measurement Techniques for the Validation of Agent-Based Simulations Against Streaming Data

      • Timothy W. Schoenharl, Greg Madey

      Pages 6-15

   5. Using Intelligent Optimization Methods to Improve the Group Method of Data Handling in Time Series Prediction

      • Maysam Abbod, Karishma Deshpande

      Pages 16-25

   6. Symbiotic Simulation Control in Semiconductor Manufacturing

      • Heiko Aydt, Stephen John Turner, Wentong Cai, Malcolm Yoke Hean Low, Peter Lendermann, Boon Ping Gan

      Pages 26-35

   7. Applying a Dynamic Data Driven Genetic Algorithm to Improve Forest Fire Spread Prediction

      • Mónica Denham, Ana Cortés, Tomàs Margalef, Emilio Luque

      Pages 36-45

   8. Real-Time Data Driven Wildland Fire Modeling

      • Jonathan D. Beezley, Soham Chakraborty, Janice L. Coen, Craig C. Douglas, Jan Mandel, Anthony Vodacek et al.

      Pages 46-53

   9. DDDAS Predictions for Water Spills

      • Craig C. Douglas, Paul Dostert, Yalchin Efendiev, Richard E. Ewing, Deng Li, Robert A. Lodder

      Pages 54-63

3. Bioinformatics’ Challenges to Computer Science

   1. Front Matter

      Pages 65-65

      PDF

   2. Bioinformatics’ Challenges to Computer Science

      • Mario Cannataro, Mathilde Romberg, Joakim Sundnes, Rodrigo Weber dos Santos

      Pages 67-69

   3. Grid Computing Solutions for Distributed Repositories of Protein Folding and Unfolding Simulations

      • Martin Swain, Vitaliy Ostropytskyy, Cândida G. Silva, Frederic Stahl, Olivier Riche, Rui M. M. Brito et al.

      Pages 70-79

   4. Provenance Querying for End-Users: A Drug Resistance Case Study

      • Bartosz Baliś, Marian Bubak, Michal Pelczar, Jakub Wach

      Pages 80-89

   5. Integrating and Accessing Medical Data Resources within the ViroLab Virtual Laboratory

      • Matthias Assel, Piotr Nowakowski, Marian Bubak

      Pages 90-99

   6. Optimisation of Asymmetric Mutational Pressure and Selection Pressure Around the Universal Genetic Code

      • Paweł Mackiewicz, Przemysław Biecek, Dorota Mackiewicz, Joanna Kiraga, Krystian Baczkowski, Maciej Sobczynski et al.

      Pages 100-109

   7. Simulating Complex Calcium-Calcineurin Signaling Network

      • Jiangjun Cui, Jaap A. Kaandorp

      Pages 110-119

   8. Web Applications Supporting the Development of Models of Chagas’ Disease for Left Ventricular Myocytes of Adult Rats

      • Caroline Mendonça Costa, Ricardo Silva Campos, Fernando Otaviano Campos, Rodrigo Weber dos Santos

      Pages 120-129

   9. A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data

      • Vinsensius B. Vega, Yijun Ruan, Wing-Kin Sung

      Pages 130-139

   10. Quality of Feature Selection Based on Microarray Gene Expression Data

       • Henryk Maciejewski

       Pages 140-147

The three-volume set LNCS 5101-5103 constitutes the refereed proceedings of the 8th International Conference on Computational Science, ICCS 2008, held in Krakow, Poland in June 2008. The 167 revised papers of the main conference track presented together with the abstracts of 7 keynote talks and the 100 revised papers from 14 workshops were carefully reviewed and selected for inclusion in the three volumes. The main conference track was divided into approximately 20 parallel sessions addressing topics such as e-science applications and systems, scheduling and load balancing, software services and tools, new hardware and its applications, computer networks, simulation of complex systems, image processing and visualization, optimization techniques, numerical linear algebra, and numerical algorithms. The second volume contains workshop papers related to various computational research areas, e.g.: computer graphics and geometric modeling, simulation of multiphysics multiscale systems, computational chemistry and its applications, computational finance and business intelligence, physical, biological and social networks, geocomputation, and teaching computational science. The third volume is mostly related to computer science topics such as bioinformatics' challenges to computer science, tools for program development and analysis in computational science, software engineering for large-scale computing, collaborative and cooperative environments, applications of workflows in computational science, as well as intelligent agents and evolvable systems.

• Hardware
• Processing
• algorithms
• bioinformatics
• computer
• computer graphics
• computer science
• geometric modeling
• image processing
• modeling
• optimization
• simulation
• tools
• visualization

• Institute of Computer Science and Academic Computer Center CYFRONET, AGH University of Science and Technology, Kraków, Poland

  Marian Bubak

• Department of Mathematics and Computer Science, University of Amsterdam, Amsterdam, The Netherlands

  Geert Dick Albada

• Computer Science Department, University of Tennessee, Knoxville, USA

  Jack Dongarra

• Computational Science, University of Amsterdam, Amsterdam, The Netherlands

  Peter M. A. Sloot

Policies and ethics