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Computational Life Sciences II

Second International Symposium, CompLife 2006, Cambridge, UK, September 27-29, 2006, Proceedings

  • Conference proceedings
  • © 2006

Overview

Editors:
  1. Michael R. Berthold

    1. Berkeley Initiative in Soft Computing (BISC), University of California at Berkeley, USA

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  2. Robert C. Glen

    1. Department of Chemistry, Unilever Centre for Molecular Informatics, Cambridge University, Cambridge, UK

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    You can also search for this editor in PubMed   Google Scholar

  3. Ingrid Fischer

    1. ALTANA Chair for Bioinformatics and Information Mining, University of Konstanz, Germany

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 4216)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: CompLife 2006.

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Table of contents (25 papers)

  1. Front Matter

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  2. Genomics

    1. Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering

      • Michael Hirsch, Allan Tucker, Stephen Swift, Nigel Martin, Christine Orengo, Paul Kellam et al.
      Pages 1-10

    2. A Hybrid Grid and Its Application to Orthologous Groups Clustering

      • Tae-Kyung Kim, Kyung-Ran Kim, Sang-Keun Oh, Jong-Hak Lee, Wan-Sup Cho
      Pages 11-20

    3. Promoter Prediction Using Physico-Chemical Properties of DNA

      • Philip Uren, R. Michael Cameron-Jones, Arthur Sale
      Pages 21-31

    4. Parametric Spectral Analysis of Malaria Gene Expression Time Series Data

      • Liping Du, Shuanhu Wu, Alan Wee-Chung Liew, David Keith Smith, Hong Yan
      Pages 32-41

    5. An Efficient Algorithm for Finding Long Conserved Regions Between Genes

      • Tak-Man Ma, Yuh-Dauh Lyuu, Yen-Wu Ti
      Pages 42-51

    6. The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders

      • Matthias Bernt, Daniel Merkle, Martin Middendorf
      Pages 52-63

  3. Data Mining

    1. Building Structure-Property Predictive Models Using Data Assimilation

      • Hamse Y. Mussa, David J. Lary, Robert C. Glen
      Pages 64-73

    2. Set-Oriented Dimension Reduction: Localizing Principal Component Analysis Via Hidden Markov Models

      • Illia Horenko, Johannes Schmidt-Ehrenberg, Christof Schütte
      Pages 74-85

    3. Relational Subgroup Discovery for Descriptive Analysis of Microarray Data

      • Igor Trajkovski, Filip Železný, Jakub Tolar, Nada Lavrač
      Pages 86-96

    4. Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph

      • Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
      Pages 97-106

    5. High-Throughput Identification of Chemistry in Life Science Texts

      • Peter Corbett, Peter Murray-Rust
      Pages 107-118

    6. Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level

      • Tim O. F. Conrad, Alexander Leichtle, Andre Hagehülsmann, Elmar Diederichs, Sven Baumann, Joachim Thiery et al.
      Pages 119-128

  4. Molecular Simulation

    1. Dynamic Complexity of Chaotic Transitions in High-Dimensional Classical Dynamics: Leu-Enkephalin Folding

      • Dmitry Nerukh, George Karvounis, Robert C. Glen
      Pages 129-140

    2. Solvent Effects and Conformational Stability of a Tripeptide

      • Maxim V. Fedorov, Stephan Schumm, Jonathan M. Goodman
      Pages 141-149

    3. Grid Assisted Ensemble Molecular Dynamics Simulations of HIV-1 Proteases Reveal Novel Conformations of the Inhibitor Saquinavir

      • S. Kashif Sadiq, Stefan J. Zasada, Peter V. Coveney
      Pages 150-161

  5. Molecular Informatics

    1. A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants

      • Annalisa Marsico, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder, Dirk Labudde
      Pages 162-172

    2. Classifying the World Anti-Doping Agency’s 2005 Prohibited List Using the Chemistry Development Kit Fingerprint

      • Edward O. Cannon, John B. O. Mitchell
      Pages 173-182

    3. A Point-Matching Based Algorithm for 3D Surface Alignment of Drug-Sized Molecules

      • Daniel Baum, Hans-Christian Hege
      Pages 183-193

  6. Systems Biology

    1. Adaptive Approach for Modelling Variability in Pharmacokinetics

      • Andrea Y. Weiße, Illia Horenko, Wilhelm Huisinga
      Pages 194-204
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Other volumes

  1. Computational Life Sciences II

Keywords

Editors and Affiliations

  • Berkeley Initiative in Soft Computing (BISC), University of California at Berkeley, USA

    Michael R. Berthold

  • Department of Chemistry, Unilever Centre for Molecular Informatics, Cambridge University, Cambridge, UK

    Robert C. Glen

  • ALTANA Chair for Bioinformatics and Information Mining, University of Konstanz, Germany

    Ingrid Fischer

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