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  • © 2011

RNA and DNA Editing

Methods and Protocols

  • Features cutting-edge methodologies focused on the study of this diverse field of study
  • Includes unique genetic, molecular, biochemical, and computational approaches
  • Contains expert tips and implementation advice
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 718)

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Table of contents (16 protocols)

  1. Front Matter

    Pages i-xiii
  2. Uracil Insertion/Deletion RNA Editing in Mitochondrion of Trypanosoma brucei

    1. Front Matter

      Pages 1-1
  3. Uracil Insertion/Deletion RNA Editing in Mitochondrion of Trypanosoma brucei

    1. Three-Dimensional Reconstruction of Trypanosoma brucei Editosomes Using Single-Particle Electron Microscopy

      • H. Ulrich Göringer, Holger Stark, Cordula Böhm, Bjoern Sander, Monika M. Golas
      Pages 3-22
    2. iCODA: RNAi-Based Inducible Knock-In System in Trypanosoma brucei

      • Gene-Errol Ringpis, Richard H. Lathrop, Ruslan Aphasizhev
      Pages 23-37
  4. Adenosine to Inosine RNA Editing

    1. Front Matter

      Pages 39-39
    2. Perturbing A-to-I RNA Editing Using Genetics and Homologous Recombination

      • Cynthia J. Staber, Selena Gell, James E. C. Jepson, Robert A. Reenan
      Pages 41-73
    3. Laser Microdissection and Pressure Catapulting of Single Human Motor Neurons for RNA Editing Analysis

      • Hui Sun, Aruna Raja, Mary A. O’Connell, Valerie Mann, Brendon Noble, Liam P. Keegan
      Pages 75-87
  5. Cytidine to Uracil RNA and DNA Editing

    1. Front Matter

      Pages 101-101
    2. Identifying mRNA Editing Deaminase Targets by RNA-Seq

      • Brad R. Rosenberg, Scott Dewell, F. Nina Papavasiliou
      Pages 103-119
    3. Mouse and Other Rodent Models of C to U RNA Editing

      • Valerie Blanc, Nicholas O. Davidson
      Pages 121-135
    4. In Vivo Analysis of RNA Editing in Plastids

      • Stephanie Ruf, Ralph Bock
      Pages 137-150
    5. A High-Throughput Assay for DNA Deaminases

      • Meng Wang, Cristina Rada, Michael S. Neuberger
      Pages 171-184
  6. tRNA Editing and RNA Modifications

    1. Front Matter

      Pages 207-207
    2. Analysis of tRNA Editing in Native and Synthetic Substrates

      • Jessica L. Spears, Kirk W. Gaston, Juan D. Alfonzo
      Pages 209-226
    3. Post-transcriptional Modification of RNAs by Artificial Box H/ACA and Box C/D RNPs

      • Chao Huang, John Karijolich, Yi-Tao Yu
      Pages 227-244

About this book

The recent expansion in diversity of RNA and DNA editing types has stimulated the development of many unique genetic, molecular, biochemical, and computational approaches to biological issues.  In RNA and DNA Editing: Methods and Protocols, leading experts in the field introduce methods developed over the last few years to study editing substrates, mechanisms of specificity, and functions of RNA and DNA editing enzymes and complexes. Sections of the book are dedicated to state-of-the art techniques which enable investigation of uracil insertion/deletion RNA editing in mitochondrion of Trypanosoma brucei, adenosine to inosine RNA editing, cytidine to uracil RNA and DNA editing, as well as tRNA editing and RNA modifications.  Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

 

Authoritative and cutting-edge, RNA and DNA Editing: Methods and Protocols seeks to inspire the further development of these vital and powerful techniques.

Reviews

From the reviews:

“This book on RNA and DNA Editing, Methods and Protocols provides methods to study editing substrates, mechanisms of specificity and functions of RNA and DNA editing enzymes and complexes … . The apparent audience is molecular biologists interested in RNA and DNA editing.” (Omer Iqbal, Doody’s Book Reviews, March, 2012)

“It is quite timely that a Methods book dedicated at experimental approaches to investigate RNA editing mechanisms should find its rightful place in the series. To achieve this aim, the editor … has successfully united many leading experts in this field to write several Chapters dedicated at explaining state-of-the-art techniques … . this is an invaluable store of information that can potentially save weeks or months spent simply in learning what-to-do and what-not-to-do when setting up a particular procedure in their own lab.” (Emanuele Buratti, Molecular Biotechnology, September, 2011)

Editors and Affiliations

  • School of Medicine, Dept. Microbiology & Molecular Genetics, University of California, Irvine, Irvine, USA

    Ruslan Aphasizhev

Bibliographic Information

  • Book Title: RNA and DNA Editing

  • Book Subtitle: Methods and Protocols

  • Editors: Ruslan Aphasizhev

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-018-8

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2011

  • Hardcover ISBN: 978-1-61779-017-1Published: 14 February 2011

  • Softcover ISBN: 978-1-4939-5821-4Published: 23 August 2016

  • eBook ISBN: 978-1-61779-018-8Published: 03 March 2011

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIII, 275

  • Topics: Human Genetics, Enzymology

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access