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MicroRNA Profiling

Methods and Protocols

Editors:

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains keynotes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 1509)

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Table of contents (21 protocols)

  1. Front Matter

    Pages i-xii
  2. MiRNA Biogenesis and Regulation of Diseases: An Overview

    • Anchal Vishnoi, Sweta Rani
    Pages 1-10
  3. Assessment of Basic Biological Functions Exerted by miRNAs

    • John Nolan, Raymond L. Stallings, Olga Piskareva
    Pages 11-16
  4. MiRNA Isolation from Plants Rich in Polysaccharides and Polyphenols

    • K. K. Sabu, Fasiludeen Nadiya, Narayanannair Anjali
    Pages 25-36
  5. MicroRNA Profiling of Exosomes

    • Melissa Daly, Lorraine O’Driscoll
    Pages 37-46
  6. MiRNA Expression in Cystic Fibrosis Bronchial Epithelial Cells

    • Irene K. Oglesby, Paul J. McKiernan
    Pages 57-69
  7. Detection of MicroRNAs in Brain Slices Using In Situ Hybridization

    • Sean Quinlan, Christine Henke, Gary P. Brennan, David C. Henshall, Eva M. Jimenez-Mateos
    Pages 85-91
  8. Exosomal MicroRNA Discovery in Age-Related Macular Degeneration

    • Hanan Elshelmani, Sweta Rani
    Pages 93-113
  9. Profiling the MicroRNA Payload of Exosomes Derived from Ex Vivo Primary Colorectal Fibroblasts

    • Rahul Bhome, Rebecca Goh, Karen Pickard, Massimiliano Mellone, A. Emre Sayan, Alex Mirnezami
    Pages 115-122
  10. Circulating MicroRNAs in Cancer

    • Killian P. O’Brien, Eimear Ramphul, Linda Howard, William M. Gallagher, Carmel Malone, Michael J. Kerin et al.
    Pages 123-139
  11. Profiling Circulating miRNAs from the Plasma of Individuals with Metabolic Syndrome

    • Sadhbh O’Neill, Lorraine O’Driscoll
    Pages 141-149
  12. Manipulating MiRNA Expression to Uncover Hidden Functions

    • Sinéad T. Aherne, Nga T. Lao
    Pages 151-160
  13. MicroRNA Expression Profiling Using Agilent One-Color Microarray

    • Carmela Dell’Aversana, Cristina Giorgio, Lucia Altucci
    Pages 169-183
  14. A Multiplex Ligation Assay for miRNA Copy Number Profiling

    • Duncan Kilburn, Yunke Song, Tza-Huei Wang, Kelvin J. Liu
    Pages 185-193
  15. Practical Bioinformatics Analysis of MiRNA Data Using Online Tools

    • James A. L. Brown, Emer Bourke
    Pages 195-208
  16. Visualization and Analysis of MiRNA–Targets Interactions Networks

    • Luis E. León, Sebastián D. Calligaris
    Pages 209-220

About this book

This volume includes comprehensive descriptions of miRNA biogenesis and their role in the development and progression of various human diseases. The first few chapters of MicroRNA Profiling: Methods and Protocols discuss the effects of over-expressing and repressing of a target miRNA and their effects on cell viability and proliferation. The next few chapters explore the protocols for total RNA isolation from cells and cell-derived product including formalin fixed paraffin embedded tissue and plant tissue. The last few chapters discuss isolation and characterization of exosomes from medium conditioned by cell lines, serum, and plasma specimens. This book also includes discussions of several software tools, such as miRandola, PicTar, DIANA, and miRWalk. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.


Comprehensive and cutting-edge, MicroRNA Profiling: Methods and Protocols is a valuable resource for anyone interested in the field of Micro RNAs.

Editors and Affiliations

  • Department of Science, Waterford Institute of Technology, Waterford, Ireland

    Sweta Rani

Bibliographic Information

  • Book Title: MicroRNA Profiling

  • Book Subtitle: Methods and Protocols

  • Editors: Sweta Rani

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-6524-3

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2017

  • Hardcover ISBN: 978-1-4939-6522-9Published: 09 November 2016

  • Softcover ISBN: 978-1-4939-8225-7Published: 20 June 2018

  • eBook ISBN: 978-1-4939-6524-3Published: 08 November 2016

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 246

  • Number of Illustrations: 9 b/w illustrations, 32 illustrations in colour

  • Topics: Human Genetics

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access